| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 11441 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| Canary Current | Sea/Bay/Gulf | native | 11441 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Ébrié | Lagoon | native | 28587 |
| Ethiopian | Zoogeographic realm | native | 28587 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Guinea Current | Sea/Bay/Gulf | native | 4438 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 1632 |
| Indian Ocean | Sea/Bay/Gulf | native | 11441 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8630 |
| Manila Bay | Sea/Bay/Gulf | native | 50345 |
| Mediterranean Sea | Sea/Bay/Gulf | questionable | 50345 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Sanaga | River (basin) | questionable | 51193 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3263 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 2334 |