| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 391 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Andaman Sea | Sea/Bay/Gulf | native | 247 |
| Arabian Sea | Sea/Bay/Gulf | native | 247 |
| Bay of Bengal | Sea/Bay/Gulf | native | 247 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 6871 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 247 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 247 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 247 |
| Indian Ocean | Sea/Bay/Gulf | native | 247 |
| Indonesian Sea | Sea/Bay/Gulf | native | 247 |
| Kuroshio Current | Sea/Bay/Gulf | native | 247 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Manila Bay | Sea/Bay/Gulf | native | 280 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 247 |
| Polynesian Waters | Sea/Bay/Gulf | native | 37816 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 247 |
| South China Sea | Sea/Bay/Gulf | native | 247 |
| Southern China | Sea/Bay/Gulf | native | 247 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 247 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Verde Island Passage | Sea/Bay/Gulf | native | 280 |
| Visayan Sea | Sea/Bay/Gulf | native | 47736 |
| Yellow Sea | Sea/Bay/Gulf | native | 247 |