| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 402 |
| Bay of Bengal | Sea/Bay/Gulf | native | 402 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Indian Ocean | Sea/Bay/Gulf | native | 402 |
| Indonesian Sea | Sea/Bay/Gulf | native | 402 |
| Pacific Ocean | Sea/Bay/Gulf | native | 402 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 402 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |