| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 55 |
| Andaman Sea | Sea/Bay/Gulf | native | 55 |
| Arabian Sea | Sea/Bay/Gulf | native | 55 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 9821 |
| Bank 8 | Seamount | native | 35722 |
| Bank 9 | Seamount | native | 50505 |
| Bay of Bengal | Sea/Bay/Gulf | native | 55 |
| Brooks Banks | Seamount | native | 35722 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 55 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 55 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 55 |
| Indian Ocean | Sea/Bay/Gulf | native | 9821 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 55 |
| Kaimon Maru Seamount | Seamount | native | 50734 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Nero Seamount | Seamount | native | 50612 |
| Northampton Seamount | Seamount | native | 35722 |
| Pacific Ocean | Sea/Bay/Gulf | native | 55 |
| Persian Gulf | Sea/Bay/Gulf | native | 171 |
| Polynesian Waters | Sea/Bay/Gulf | native | 55 |
| Raita Bank | Seamount | native | 35722 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Saint Rogatien Bank | Seamount | native | 35722 |
| Salmon Bank | Seamount | native | 35722 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 55 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 55 |
| Twin Banks | Seamount | native | 35722 |
| Yellow Sea | Sea/Bay/Gulf | native | 55 |