| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Arabian Sea | Sea/Bay/Gulf | native | 1602 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 5403 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 5403 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 5403 |
| Indian Ocean | Sea/Bay/Gulf | native | 5403 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 583 |
| Kuroshio Current | Sea/Bay/Gulf | native | 1602 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Mediterranean Sea | Sea/Bay/Gulf | questionable | 95871 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5403 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5403 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5403 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 1602 |
| Polynesian Waters | Sea/Bay/Gulf | native | 4517 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Sogod Bay | Sea/Bay/Gulf | native | 31411 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Tawi tawi Bay | Sea/Bay/Gulf | native | 59110 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 57038 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Visayan Sea | Sea/Bay/Gulf | native | 110387 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |