| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Indian Ocean | Sea/Bay/Gulf | native | 3132 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | endemic | 3132 |
| Northeast Australian Shelf | Sea/Bay/Gulf | endemic | 3132 |
| Northwest Australian Shelf | Sea/Bay/Gulf | endemic | 3132 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3132 |
| Shark Bay | Sea/Bay/Gulf | native | 116003 |