| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2331 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 28620 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 46208 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| Moro Gulf | Sea/Bay/Gulf | native | 106380 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2331 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2331 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 37792 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 1602 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |