| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 4201 |
| Arabian Sea | Sea/Bay/Gulf | native | 45255 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 1602 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 33390 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 33390 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 33390 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| South China Sea | Sea/Bay/Gulf | native | 47843 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |