| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Indian Ocean | Sea/Bay/Gulf | native | 7247 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7247 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7247 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7247 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7247 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |