| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| East China Sea | Sea/Bay/Gulf | native | 3810 |
| Indian Ocean | Sea/Bay/Gulf | native | 3810 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3810 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3810 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3810 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3810 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3810 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sea of Japan/East Sea | Sea/Bay/Gulf | native | 3810 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 3810 |
| Visayan Sea | Sea/Bay/Gulf | native | 3557 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |