| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 55 |
| Andaman Sea | Sea/Bay/Gulf | native | 55 |
| Arabian Sea | Sea/Bay/Gulf | native | 55 |
| Bay of Bengal | Sea/Bay/Gulf | native | 55 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 55 |
| Dauin-Apo I. | Sea/Bay/Gulf | native | 127519 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 55 |
| Gulf of Aden | Sea/Bay/Gulf | native | 55 |
| Gulf of Oman | Sea/Bay/Gulf | native | 55 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 55 |
| Indian Ocean | Sea/Bay/Gulf | native | 55 |
| Indonesian Sea | Sea/Bay/Gulf | native | 55 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 55 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | native | 55 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 55 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 55 |
| Pacific Ocean | Sea/Bay/Gulf | native | 55 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 171 |
| Polynesian Waters | Sea/Bay/Gulf | native | 55 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Ruerhmen River | River (basin) | native | 36073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Shiliao River | River (basin) | native | 36073 |
| Socotra Archipelago | Sea/Bay/Gulf | native | 37631 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 55 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 29014 |
| Tahiti I. | Sea/Bay/Gulf | native | 55 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 55 |