| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5578 |
| Andaman and Nicobar Islands | Sea/Bay/Gulf | native | 118627 |
| Arabian Sea | Sea/Bay/Gulf | native | 244 |
| Bay of Bengal | Sea/Bay/Gulf | native | 118627 |
| Gulf of Aden | Sea/Bay/Gulf | native | 244 |
| Indian Ocean | Sea/Bay/Gulf | native | 244 |
| Indonesian Sea | Sea/Bay/Gulf | native | 244 |
| Manila Bay | Sea/Bay/Gulf | native | 280 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 6871 |
| Pacific Ocean | Sea/Bay/Gulf | native | 6871 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 244 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 244 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 244 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Visayan Sea | Sea/Bay/Gulf | native | 47736 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| Yellow Sea | Sea/Bay/Gulf | native | 244 |