| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 9843 |
| Erhjen River | River (basin) | native | 36073 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9843 |
| Indian Ocean | Sea/Bay/Gulf | native | 9843 |
| Indonesian Sea | Sea/Bay/Gulf | native | 9843 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 9843 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 9843 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 9843 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Polynesian Waters | Sea/Bay/Gulf | native | 9710 |
| Ruerhmen River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southeast Australian Shelf | Sea/Bay/Gulf | native | 48497 |
| Southern China | Sea/Bay/Gulf | native | 31075 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |