| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Adma River | River (basin) | native | 89719 |
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Arabian Sea | Sea/Bay/Gulf | native | 12076 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 4343 |
| Australian | Zoogeographic realm | native | 5259 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Buluan | Lake | native | 13492 |
| Buxa River | River (basin) | native | 89719 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Chittar River | River (basin) | native | 44312 |
| Choto Jamuna | River (basin) | native | 100698 |
| Da River | River (basin) | native | 89724 |
| Dakrong River | River (basin) | native | 89722 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Ethiopian | Zoogeographic realm | native | 4343 |
| Fitzroy | River (basin) | native | 84364 |
| Godavari | River (basin) | native | 43636 |
| Gulf of Aden | Sea/Bay/Gulf | native | 120668 |
| Indian Ocean | Sea/Bay/Gulf | native | 4343 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Jayanti River | River (basin) | native | 89719 |
| Kaoping River | River (basin) | native | |
| Krishna River | River (basin) | native | 43636 |
| Laguna de Bay | Lake | native | 13460 |
| Lake Lanao | Lake | introduced | 10888 |
| Lake Mainit | Lake | native | 110258 |
| Malacca Strait | Sea/Bay/Gulf | native | 121464 |
| Mekong | River (basin) | native | 12693 |
| Naujan Lake | Lake | native | 13446 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5259 |
| Oriental | Zoogeographic realm | native | 12076 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5259 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Sabaki | River (basin) | native | 30558 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| Sikao Creek | River (basin) | native | 52823 |
| Society Islands | Sea/Bay/Gulf | native | 120578 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 30558 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Southern Red Sea | Sea/Bay/Gulf | native | 120578 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 280 |
| Taal Lake | Lake | native | 12165 |
| Tana | River (basin) | native | 52331 |
| Tañon Strait | Sea/Bay/Gulf | native | 11337 |
| Tigris | River (basin) | native | 39702 |
| Zambezi | River (basin) | native | 39494 |