| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5293 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 107299 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5293 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1602 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 121724 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |