| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 37816 |
| Indian Ocean | Sea/Bay/Gulf | native | 5222 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5222 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5222 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5222 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 5222 |
| Southern Palawan | Sea/Bay/Gulf | native | 58652 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 5222 |
| Yellow Sea | Sea/Bay/Gulf | native | 5222 |