| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 90102 |
| Coral Sea | Sea/Bay/Gulf | native | 75154 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 13227 |
| Exmouth to Broome | Sea/Bay/Gulf | native | 75154 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 13227 |
| Indian Ocean | Sea/Bay/Gulf | native | 13227 |
| North Australian Shelf | Sea/Bay/Gulf | native | 13227 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 13227 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 13227 |
| Pacific Ocean | Sea/Bay/Gulf | native | 13227 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |