| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 5296 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 5296 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Indian Ocean | Sea/Bay/Gulf | native | 5296 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5296 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| Moro Gulf | Sea/Bay/Gulf | native | 106380 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2334 |
| Persian Gulf | Sea/Bay/Gulf | native | 5296 |
| Polynesian Waters | Sea/Bay/Gulf | native | 9710 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |