| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Kuroshio Current | Sea/Bay/Gulf | native | 1602 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Shiliao River | River (basin) | native | 36073 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 31740 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 119494 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 1602 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |