| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 1602 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 37792 |
| Gulf of Oman | Sea/Bay/Gulf | native | 47613 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 1921 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 1602 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 1602 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| Narra | Sea/Bay/Gulf | native | 114805 |
| North Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 37792 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1602 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Persian Gulf | Sea/Bay/Gulf | native | 47613 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |